Index

_

__init__() (fractaldna.dna_models.basepair.BasePair method) (fractaldna.dna_models.dnachain.DNAChain method) (fractaldna.dna_models.dnachain.DoubleDNAChain method) (fractaldna.dna_models.dnachain.EightStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain method) (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.PlottableSequence method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDoubleDNAChain method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) (fractaldna.dna_models.dnachain.TurnedTwistedDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain method) (fractaldna.dna_models.dnapositions.DoubleStrand method) (fractaldna.dna_models.dnapositions.DoubleStrandMolecules method) (fractaldna.dna_models.dnapositions.MoleculeDictionary method) (fractaldna.dna_models.dnapositions.MoleculeFromAtoms method) (fractaldna.dna_models.molecules.Adenine method) (fractaldna.dna_models.molecules.Cytosine method) (fractaldna.dna_models.molecules.DNASugar method) (fractaldna.dna_models.molecules.Guanine method) (fractaldna.dna_models.molecules.Molecule method) (fractaldna.dna_models.molecules.Thymine method) (fractaldna.dna_models.molecules.Triphosphate method) (fractaldna.structure_models.random_placements.Arrow3D method) (fractaldna.structure_models.random_placements.Prism method) (fractaldna.structure_models.random_placements.PrismList method) (fractaldna.structure_models.voxelisation.Voxel method) (fractaldna.structure_models.voxelisation.VoxelisedFractal method)

A

add_callback() (fractaldna.structure_models.random_placements.Arrow3D method) Adenine (class in fractaldna.dna_models.molecules) append() (fractaldna.structure_models.random_placements.PrismList method)

Arrow3D (class in fractaldna.structure_models.random_placements) as_series() (fractaldna.dna_models.dnachain.Histone method) atanpi() (in module fractaldna.dna_models.dnapositions) axes (fractaldna.structure_models.random_placements.Arrow3D property)

B

base_name() (in module fractaldna.dna_models.dnapositions)

BasePair (class in fractaldna.dna_models.basepair)

C

center_fractal() (fractaldna.structure_models.voxelisation.VoxelisedFractal method) center_in_z() (fractaldna.dna_models.dnachain.DNAChain method) (fractaldna.dna_models.dnachain.DoubleDNAChain method) (fractaldna.dna_models.dnachain.EightStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDoubleDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain method)

contains() (fractaldna.structure_models.random_placements.Arrow3D method) contains_point() (fractaldna.structure_models.random_placements.Arrow3D method) (fractaldna.structure_models.random_placements.Prism method) contains_points() (fractaldna.structure_models.random_placements.Arrow3D method) convert_xunits() (fractaldna.structure_models.random_placements.Arrow3D method) convert_yunits() (fractaldna.structure_models.random_placements.Arrow3D method) Cytosine (class in fractaldna.dna_models.molecules)

D

DNAChain (class in fractaldna.dna_models.dnachain) DNASugar (class in fractaldna.dna_models.molecules) does_overlap() (fractaldna.structure_models.random_placements.Prism method)

DoubleDNAChain (class in fractaldna.dna_models.dnachain) DoubleStrand (class in fractaldna.dna_models.dnapositions) DoubleStrandMolecules (class in fractaldna.dna_models.dnapositions) draw() (fractaldna.structure_models.random_placements.Arrow3D method)

E

EightStrandDNAChain (class in fractaldna.dna_models.dnachain)

eulerMatrix() (in module fractaldna.utils.rotations)

F

fill (fractaldna.structure_models.random_placements.Arrow3D property) find_center() (fractaldna.dna_models.dnapositions.MoleculeFromAtoms method) find_equivalent_half_lengths() (fractaldna.dna_models.dnapositions.MoleculeFromAtoms method) find_equivalent_radius() (fractaldna.dna_models.dnapositions.MoleculeFromAtoms method) find_half_lengths() (fractaldna.dna_models.dnapositions.MoleculeFromAtoms method) find_radius() (fractaldna.dna_models.dnapositions.MoleculeFromAtoms method) findobj() (fractaldna.structure_models.random_placements.Arrow3D method) format_cursor_data() (fractaldna.structure_models.random_placements.Arrow3D method) FourStrandDNAChain (class in fractaldna.dna_models.dnachain) FourStrandTurnedDNAChain (class in fractaldna.dna_models.dnachain) fractaldna.dna_models module fractaldna.dna_models.basepair module fractaldna.dna_models.dnachain module fractaldna.dna_models.dnapositions module fractaldna.dna_models.molecules module fractaldna.exceptions module

fractaldna.structure_models module fractaldna.structure_models.hilbert module fractaldna.structure_models.random_placements module fractaldna.structure_models.voxelisation module fractaldna.utils module fractaldna.utils.constants module fractaldna.utils.logging module fractaldna.utils.rotations module fractaldna.utils.sequence module FractalDNAException from_cylindrical() (fractaldna.dna_models.dnapositions.MoleculeFromAtoms class method) from_path() (fractaldna.structure_models.voxelisation.VoxelisedFractal class method) fromLString() (fractaldna.structure_models.voxelisation.VoxelisedFractal class method) fromSeed() (fractaldna.structure_models.voxelisation.VoxelisedFractal class method)

G

generate_non_overlapping_prisms() (in module fractaldna.structure_models.random_placements) generate_path() (in module fractaldna.structure_models.hilbert) get_aa() (fractaldna.structure_models.random_placements.Arrow3D method) get_agg_filter() (fractaldna.structure_models.random_placements.Arrow3D method) get_alpha() (fractaldna.structure_models.random_placements.Arrow3D method) get_animated() (fractaldna.structure_models.random_placements.Arrow3D method) get_antialiased() (fractaldna.structure_models.random_placements.Arrow3D method) get_arrowstyle() (fractaldna.structure_models.random_placements.Arrow3D method) get_capstyle() (fractaldna.structure_models.random_placements.Arrow3D method) get_children() (fractaldna.structure_models.random_placements.Arrow3D method) get_clip_box() (fractaldna.structure_models.random_placements.Arrow3D method) get_clip_on() (fractaldna.structure_models.random_placements.Arrow3D method) get_clip_path() (fractaldna.structure_models.random_placements.Arrow3D method) get_connectionstyle() (fractaldna.structure_models.random_placements.Arrow3D method) get_cursor_data() (fractaldna.structure_models.random_placements.Arrow3D method) get_data_transform() (fractaldna.structure_models.random_placements.Arrow3D method) get_dna_string() (in module fractaldna.utils.sequence) get_ec() (fractaldna.structure_models.random_placements.Arrow3D method) get_edgecolor() (fractaldna.structure_models.random_placements.Arrow3D method) get_euler_angles() (in module fractaldna.structure_models.random_placements) get_extents() (fractaldna.structure_models.random_placements.Arrow3D method) get_facecolor() (fractaldna.structure_models.random_placements.Arrow3D method) get_fc() (fractaldna.structure_models.random_placements.Arrow3D method) get_figure() (fractaldna.structure_models.random_placements.Arrow3D method) get_fill() (fractaldna.structure_models.random_placements.Arrow3D method) get_gid() (fractaldna.structure_models.random_placements.Arrow3D method) get_hatch() (fractaldna.structure_models.random_placements.Arrow3D method) get_in_layout() (fractaldna.structure_models.random_placements.Arrow3D method) get_joinstyle() (fractaldna.structure_models.random_placements.Arrow3D method)

get_label() (fractaldna.structure_models.random_placements.Arrow3D method) get_linestyle() (fractaldna.structure_models.random_placements.Arrow3D method) get_linewidth() (fractaldna.structure_models.random_placements.Arrow3D method) get_ls() (fractaldna.structure_models.random_placements.Arrow3D method) get_lw() (fractaldna.structure_models.random_placements.Arrow3D method) get_mouseover() (fractaldna.structure_models.random_placements.Arrow3D method) get_mutation_aspect() (fractaldna.structure_models.random_placements.Arrow3D method) get_mutation_scale() (fractaldna.structure_models.random_placements.Arrow3D method) get_p_values() (in module fractaldna.dna_models.dnapositions) get_patch_transform() (fractaldna.structure_models.random_placements.Arrow3D method) get_path() (fractaldna.structure_models.random_placements.Arrow3D method) get_picker() (fractaldna.structure_models.random_placements.Arrow3D method) get_point() (fractaldna.structure_models.random_placements.Prism method) get_prism_grid_indices() (fractaldna.structure_models.random_placements.PrismList method) get_rasterized() (fractaldna.structure_models.random_placements.Arrow3D method) get_sketch_params() (fractaldna.structure_models.random_placements.Arrow3D method) get_snap() (fractaldna.structure_models.random_placements.Arrow3D method) get_tightbbox() (fractaldna.structure_models.random_placements.Arrow3D method) get_transform() (fractaldna.structure_models.random_placements.Arrow3D method) get_transformed_clip_path_and_affine() (fractaldna.structure_models.random_placements.Arrow3D method) get_url() (fractaldna.structure_models.random_placements.Arrow3D method) get_verts() (fractaldna.structure_models.random_placements.Arrow3D method) get_visible() (fractaldna.structure_models.random_placements.Arrow3D method) get_window_extent() (fractaldna.structure_models.random_placements.Arrow3D method) get_zorder() (fractaldna.structure_models.random_placements.Arrow3D method) getCenter() (fractaldna.dna_models.basepair.BasePair method) getEulerAngles() (in module fractaldna.structure_models.voxelisation) (in module fractaldna.utils.rotations) Guanine (class in fractaldna.dna_models.molecules)

H

have_units() (fractaldna.structure_models.random_placements.Arrow3D method) Histone (class in fractaldna.dna_models.dnachain)

histones_to_frame() (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.TurnedSolenoid method)

I

is_separating_axis() (in module fractaldna.structure_models.random_placements)

is_transform_set() (fractaldna.structure_models.random_placements.Arrow3D method) iterate_lstring() (in module fractaldna.structure_models.hilbert)

M

matrix_interpolate() (in module fractaldna.utils.rotations) mc_triple_volume() (in module fractaldna.dna_models.dnapositions) module fractaldna.dna_models fractaldna.dna_models.basepair fractaldna.dna_models.dnachain fractaldna.dna_models.dnapositions fractaldna.dna_models.molecules fractaldna.exceptions fractaldna.structure_models fractaldna.structure_models.hilbert fractaldna.structure_models.random_placements fractaldna.structure_models.voxelisation fractaldna.utils fractaldna.utils.constants fractaldna.utils.logging fractaldna.utils.rotations fractaldna.utils.sequence

Molecule (class in fractaldna.dna_models.molecules) MoleculeDictionary (class in fractaldna.dna_models.dnapositions) MoleculeFromAtoms (class in fractaldna.dna_models.dnapositions) mouseover (fractaldna.structure_models.random_placements.Arrow3D property) MultiSolenoidVolume (class in fractaldna.dna_models.dnachain)

O

opposite_pair() (in module fractaldna.dna_models.dnapositions)

overlap_volume() (in module fractaldna.dna_models.dnapositions)

P

pchanged() (fractaldna.structure_models.random_placements.Arrow3D method) pick() (fractaldna.structure_models.random_placements.Arrow3D method) pickable() (fractaldna.structure_models.random_placements.Arrow3D method) PlottableSequence (class in fractaldna.dna_models.dnachain) point_in_molecule() (fractaldna.dna_models.molecules.Adenine method) (fractaldna.dna_models.molecules.Cytosine method) (fractaldna.dna_models.molecules.DNASugar method) (fractaldna.dna_models.molecules.Guanine method) (fractaldna.dna_models.molecules.Molecule method) (fractaldna.dna_models.molecules.Thymine method) (fractaldna.dna_models.molecules.Triphosphate method)

Prism (class in fractaldna.structure_models.random_placements) PrismList (class in fractaldna.structure_models.random_placements) properties() (fractaldna.structure_models.random_placements.Arrow3D method)

Q

quaternion_about_axis() (in module fractaldna.utils.rotations) quaternion_from_matrix() (in module fractaldna.utils.rotations)

quaternion_matrix() (in module fractaldna.utils.rotations) quaternion_multiply() (in module fractaldna.utils.rotations) quaternion_slerp() (in module fractaldna.utils.rotations)

R

random_direction() (in module fractaldna.structure_models.random_placements) random_point_in_ball() (in module fractaldna.structure_models.random_placements) remove() (fractaldna.structure_models.random_placements.Arrow3D method) remove_callback() (fractaldna.structure_models.random_placements.Arrow3D method) rot_ax_angle() (in module fractaldna.structure_models.voxelisation) (in module fractaldna.utils.rotations) rotate() (fractaldna.dna_models.basepair.BasePair method) (fractaldna.dna_models.molecules.Adenine method) (fractaldna.dna_models.molecules.Cytosine method) (fractaldna.dna_models.molecules.DNASugar method) (fractaldna.dna_models.molecules.Guanine method) (fractaldna.dna_models.molecules.Molecule method) (fractaldna.dna_models.molecules.Thymine method) (fractaldna.dna_models.molecules.Triphosphate method)

roth() (in module fractaldna.structure_models.hilbert) rotl() (in module fractaldna.structure_models.hilbert) rotu() (in module fractaldna.structure_models.hilbert) rotx() (in module fractaldna.structure_models.hilbert) (in module fractaldna.utils.rotations) roty() (in module fractaldna.structure_models.hilbert) (in module fractaldna.utils.rotations) rotz() (in module fractaldna.structure_models.hilbert) (in module fractaldna.utils.rotations)

S

set() (fractaldna.structure_models.random_placements.Arrow3D method) set_aa() (fractaldna.structure_models.random_placements.Arrow3D method) set_agg_filter() (fractaldna.structure_models.random_placements.Arrow3D method) set_alpha() (fractaldna.structure_models.random_placements.Arrow3D method) set_animated() (fractaldna.structure_models.random_placements.Arrow3D method) set_antialiased() (fractaldna.structure_models.random_placements.Arrow3D method) set_arrowstyle() (fractaldna.structure_models.random_placements.Arrow3D method) set_bp_index() (fractaldna.dna_models.basepair.BasePair method) set_capstyle() (fractaldna.structure_models.random_placements.Arrow3D method) set_clip_box() (fractaldna.structure_models.random_placements.Arrow3D method) set_clip_on() (fractaldna.structure_models.random_placements.Arrow3D method) set_clip_path() (fractaldna.structure_models.random_placements.Arrow3D method) set_color() (fractaldna.structure_models.random_placements.Arrow3D method) set_connectionstyle() (fractaldna.structure_models.random_placements.Arrow3D method) set_ec() (fractaldna.structure_models.random_placements.Arrow3D method) set_edgecolor() (fractaldna.structure_models.random_placements.Arrow3D method) set_facecolor() (fractaldna.structure_models.random_placements.Arrow3D method) set_fc() (fractaldna.structure_models.random_placements.Arrow3D method) set_figure() (fractaldna.structure_models.random_placements.Arrow3D method) set_fill() (fractaldna.structure_models.random_placements.Arrow3D method) set_gid() (fractaldna.structure_models.random_placements.Arrow3D method) set_hatch() (fractaldna.structure_models.random_placements.Arrow3D method) set_in_layout() (fractaldna.structure_models.random_placements.Arrow3D method) set_joinstyle() (fractaldna.structure_models.random_placements.Arrow3D method) set_label() (fractaldna.structure_models.random_placements.Arrow3D method) set_linestyle() (fractaldna.structure_models.random_placements.Arrow3D method)

set_linewidth() (fractaldna.structure_models.random_placements.Arrow3D method) set_ls() (fractaldna.structure_models.random_placements.Arrow3D method) set_lw() (fractaldna.structure_models.random_placements.Arrow3D method) set_mouseover() (fractaldna.structure_models.random_placements.Arrow3D method) set_mutation_aspect() (fractaldna.structure_models.random_placements.Arrow3D method) set_mutation_scale() (fractaldna.structure_models.random_placements.Arrow3D method) set_patchA() (fractaldna.structure_models.random_placements.Arrow3D method) set_patchB() (fractaldna.structure_models.random_placements.Arrow3D method) set_path_effects() (fractaldna.structure_models.random_placements.Arrow3D method) set_picker() (fractaldna.structure_models.random_placements.Arrow3D method) set_positions() (fractaldna.structure_models.random_placements.Arrow3D method) set_rasterized() (fractaldna.structure_models.random_placements.Arrow3D method) set_sketch_params() (fractaldna.structure_models.random_placements.Arrow3D method) set_snap() (fractaldna.structure_models.random_placements.Arrow3D method) set_transform() (fractaldna.structure_models.random_placements.Arrow3D method) set_url() (fractaldna.structure_models.random_placements.Arrow3D method) set_visible() (fractaldna.structure_models.random_placements.Arrow3D method) set_zorder() (fractaldna.structure_models.random_placements.Arrow3D method) setChain() (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) setNewChain() (fractaldna.dna_models.basepair.BasePair method) Solenoid (class in fractaldna.dna_models.dnachain) SplineLinker (class in fractaldna.dna_models.dnachain) stale (fractaldna.structure_models.random_placements.Arrow3D property) sticky_edges (fractaldna.structure_models.random_placements.Arrow3D property)

T

Thymine (class in fractaldna.dna_models.molecules) to_frame() (fractaldna.dna_models.basepair.BasePair method) (fractaldna.dna_models.dnachain.DNAChain method) (fractaldna.dna_models.dnachain.DoubleDNAChain method) (fractaldna.dna_models.dnachain.EightStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain method) (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.PlottableSequence method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDoubleDNAChain method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) (fractaldna.dna_models.dnachain.TurnedTwistedDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain method) (fractaldna.structure_models.random_placements.PrismList method) (fractaldna.structure_models.voxelisation.VoxelisedFractal method) to_line_plot() (fractaldna.dna_models.dnachain.DNAChain method) (fractaldna.dna_models.dnachain.DoubleDNAChain method) (fractaldna.dna_models.dnachain.EightStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain method) (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.PlottableSequence method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDoubleDNAChain method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) (fractaldna.dna_models.dnachain.TurnedTwistedDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain method) to_plot() (fractaldna.dna_models.dnachain.DNAChain method) (fractaldna.dna_models.dnachain.DoubleDNAChain method) (fractaldna.dna_models.dnachain.EightStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain method) (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.PlottableSequence method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDoubleDNAChain method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) (fractaldna.dna_models.dnachain.TurnedTwistedDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain method) (fractaldna.dna_models.dnapositions.MoleculeFromAtoms method) (fractaldna.structure_models.random_placements.Prism method) (fractaldna.structure_models.voxelisation.VoxelisedFractal method) to_pretty_plot() (fractaldna.structure_models.voxelisation.VoxelisedFractal method) to_series() (fractaldna.dna_models.molecules.Adenine method) (fractaldna.dna_models.molecules.Cytosine method) (fractaldna.dna_models.molecules.DNASugar method) (fractaldna.dna_models.molecules.Guanine method) (fractaldna.dna_models.molecules.Molecule method) (fractaldna.dna_models.molecules.Thymine method) (fractaldna.dna_models.molecules.Triphosphate method) (fractaldna.structure_models.random_placements.Prism method) (fractaldna.structure_models.voxelisation.Voxel method) to_strand_plot() (fractaldna.dna_models.dnachain.DNAChain method) (fractaldna.dna_models.dnachain.DoubleDNAChain method) (fractaldna.dna_models.dnachain.EightStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain method) (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.PlottableSequence method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDoubleDNAChain method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) (fractaldna.dna_models.dnachain.TurnedTwistedDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain method)

to_surface_plot() (fractaldna.dna_models.dnachain.DNAChain method) (fractaldna.dna_models.dnachain.DoubleDNAChain method) (fractaldna.dna_models.dnachain.EightStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain method) (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.PlottableSequence method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDoubleDNAChain method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) (fractaldna.dna_models.dnachain.TurnedTwistedDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain method) to_text() (fractaldna.dna_models.basepair.BasePair method) (fractaldna.dna_models.dnachain.DNAChain method) (fractaldna.dna_models.dnachain.DoubleDNAChain method) (fractaldna.dna_models.dnachain.EightStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandDNAChain method) (fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain method) (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.PlottableSequence method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedDNAChain method) (fractaldna.dna_models.dnachain.TurnedDoubleDNAChain method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) (fractaldna.dna_models.dnachain.TurnedTwistedDNAChain method) (fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain method) (fractaldna.dna_models.molecules.Adenine method) (fractaldna.dna_models.molecules.Cytosine method) (fractaldna.dna_models.molecules.DNASugar method) (fractaldna.dna_models.molecules.Guanine method) (fractaldna.dna_models.molecules.Molecule method) (fractaldna.dna_models.molecules.Thymine method) (fractaldna.dna_models.molecules.Triphosphate method) (fractaldna.structure_models.random_placements.Prism method) (fractaldna.structure_models.voxelisation.Voxel method) (fractaldna.structure_models.voxelisation.VoxelisedFractal method) translate() (fractaldna.dna_models.basepair.BasePair method) (fractaldna.dna_models.dnachain.Histone method) (fractaldna.dna_models.dnachain.MultiSolenoidVolume method) (fractaldna.dna_models.dnachain.Solenoid method) (fractaldna.dna_models.dnachain.SplineLinker method) (fractaldna.dna_models.dnachain.TurnedSolenoid method) (fractaldna.dna_models.molecules.Adenine method) (fractaldna.dna_models.molecules.Cytosine method) (fractaldna.dna_models.molecules.DNASugar method) (fractaldna.dna_models.molecules.Guanine method) (fractaldna.dna_models.molecules.Molecule method) (fractaldna.dna_models.molecules.Thymine method) (fractaldna.dna_models.molecules.Triphosphate method) Triphosphate (class in fractaldna.dna_models.molecules) triple_overlap_volume() (in module fractaldna.dna_models.dnapositions) TurnedDNAChain (class in fractaldna.dna_models.dnachain) TurnedDoubleDNAChain (class in fractaldna.dna_models.dnachain) TurnedSolenoid (class in fractaldna.dna_models.dnachain) TurnedTwistedDNAChain (class in fractaldna.dna_models.dnachain) TurnedTwistedDoubleDNAChain (class in fractaldna.dna_models.dnachain)

U

unit_vector() (in module fractaldna.utils.rotations)

update() (fractaldna.structure_models.random_placements.Arrow3D method) update_from() (fractaldna.structure_models.random_placements.Arrow3D method)

V

vector_norm() (in module fractaldna.utils.rotations)

Voxel (class in fractaldna.structure_models.voxelisation) VoxelisedFractal (class in fractaldna.structure_models.voxelisation)