fractaldna.dna_models.dnapositions

dnapositions.py

Specification of DNA molecules in a variety of co-ordinate systems

Functions

atanpi(val)
base_name(base)
get_p_values(a, b, c, alpha, beta, gamma)	Helper function for triple_overlap_volume
mc_triple_volume(p1, p2, p3, r1, r2, r3[, n])
opposite_pair(base)
overlap_volume(pos1, pos2, r1, r2)	Calculate overlapping volume of two spheres
triple_overlap_volume(pos1, pos2, pos3, r1, ...)	Calculate volume overlapped by 3 spheres From Gibson and Scheraga (1987)

Classes

DoubleStrand()	Double strand of DNA (for testing)
DoubleStrandMolecules()	Double strand of DNA (for testing)
MoleculeDictionary()	Base class for test molecules
MoleculeFromAtoms(atoms)