DNA Models
==========

FractalDNA provides a number of models for building DNA.

Example notebooks are available under :doc:`Examples <examples>`.

Base and Helper Classes
-----------------------

.. autoclass:: fractaldna.dna_models.dnachain.PlottableSequence
    :members:
    :noindex:

.. autoclass:: fractaldna.dna_models.dnachain.Histone
    :members:
    :noindex:

.. autoclass:: fractaldna.dna_models.dnachain.SplineLinker
    :members:
    :noindex:

Unpacked DNA
------------
   
*Single Strand*

.. autoclass:: fractaldna.dna_models.dnachain.DNAChain
    :members:
    :noindex:

.. autoclass:: fractaldna.dna_models.dnachain.TurnedDNAChain
    :members:
    :noindex:

.. autoclass:: fractaldna.dna_models.dnachain.TurnedTwistedDNAChain
    :members:
    :noindex:

*Two Strands per Volume*

.. autoclass:: fractaldna.dna_models.dnachain.DoubleDNAChain
    :members:
    :noindex:
.. autoclass:: fractaldna.dna_models.dnachain.TurnedDoubleDNAChain
    :members:
    :noindex:
.. autoclass:: fractaldna.dna_models.dnachain.TurnedTwistedDoubleDNAChain
    :members:
    :noindex:

*Four Strands per Volume*

.. autoclass:: fractaldna.dna_models.dnachain.FourStrandDNAChain
    :members:
    :noindex:
.. autoclass:: fractaldna.dna_models.dnachain.FourStrandTurnedDNAChain
    :members:
    :noindex:

*Eight Strands per Volume*

.. autoclass:: fractaldna.dna_models.dnachain.EightStrandDNAChain
    :members:
    :noindex:

Solenoid-Packed DNA
-------------------

.. autoclass:: fractaldna.dna_models.dnachain.Solenoid
    :members:
    :noindex:
.. autoclass:: fractaldna.dna_models.dnachain.TurnedSolenoid
    :members:
    :noindex:
.. autoclass:: fractaldna.dna_models.dnachain.MultiSolenoidVolume
    :members:
    :noindex: